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Susan Holmes
STATISTICS AND PROBABILITY
Stanford University
Fellowship year
2017-18
Tyler Journal Articles
Miolane, Nina; Holmes, Susan; Pennec, Xavier; . 2018. Topologically Constrained Template Estimation via Morse-Smale Complexes Controls Its Statistical Consistency. 2(2): 348-375. https://doi.org/10.1137/17M1129222
Holmes, Susan; Josse, Julie; . 2017. Discussion of “50 Years of Data Science”. 26(4): 768-769. https://doi.org/10.1080/10618600.2017.1385471
Seiler, Christof; Holmes, Susan; . 2017. Multivariate heteroscedasticity models for functional brain connectivity. 11(DEC): 696. https://europepmc.org/articles/PMC5733000?pdf=render
Goltsman, Daniela S.Aliaga; Sun, Christine L.; Proctor, Diana M.; DiGiulio, Daniel B.; Robaczewska, Anna; Thomas, Brian C.; Shaw, Gary M.; Stevenson, David K.; Holmes, Susan P.; Banfield, Jillian F.; Relman, David A.; . 2018. Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome. 28(10): 1467-1480. http://biorxiv.org/content/early/2018/08/21/266700.abstract
Kronstad, Lisa M; Seiler, Christof; Vergara, Rosemary; Holmes, Susan P; Blish, Catherine A; . 2017. Strain-Specific Human Natural Killer Cell Recognition of Influenza A Virus. (9): 148528. http://biorxiv.org/content/early/2017/06/10/148528.abstract
Gars, M.L.; Seiler, C.; Kay, A.W.; Bayless, N.L.; Sola, E.; Starosvetsky, E.; Moore, L.; Shen-Orr, S.S.; Aziz, N.; Khatri, P.; Dekker, C.L.; Swan, G.E.; Davis, M.M.; Holmes, S.; Blish, C.A.; . 2018. CD38 contributes to human natural killer cell responses through a role in immune synapse formation. (9): 349084. http://biorxiv.org/content/early/2018/06/16/349084.abstract
Holmes, Susan; . 2018. Statistical proof? The problem of irreproducibility. 55(1): 31-55.
Donnat, Claire; Holmes, Susan; . 2018. Tracking network dynamics: A survey using graph distances. 12(2): 971-1012. https://projecteuclid.org:443/euclid.aoas/1532743483
Sankaran, Kris; Holmes, Susan; . 2018. Interactive Visualization of Hierarchically Structured Data. 27(3): 553-563. https://doi.org/10.1080/10618600.2017.1392866
Proctor, DIana M.; Fukuyama, Julia A.; Loomer, Peter M.; Armitage, Gary C.; Lee, Stacey A.; Davis, Nicole M.; Ryder, Mark I.; Holmes, Susan P.; Relman, David A.; . 2018. A spatial gradient of bacterial diversity in the human oral cavity shaped by salivary flow. 9(1): 681. https://doi.org/10.1038/s41467-018-02900-1
Jha, Aashish R.; Davenport, Emily R.; Gautam, Yoshina; Bhandari, Dinesh; Tandukar, Sarmila; Ng, Katharine M.; Fragiadakis, Gabriela K.; Holmes, Susan; Gautam, Guru Prasad; Leach, Jeff; Sherchand, Jeevan Bahadur; Bustamante, Carlos D.; Sonnenburg, Justin L.; . 2018. Gut microbiome transition across a lifestyle gradient in Himalaya. 16(11): e2005396-e2005396. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237292/
Davis, Nicole M.; Proctor, DIana M.; Holmes, Susan P.; Relman, David A.; Callahan, Benjamin J.; . 2018. Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data. 6(1): 226. https://doi.org/10.1186/s40168-018-0605-2
Holmes, Susan; Josse, Julie; . 2017. Discussion of “50 Years of Data Science”. 26(4): 768-769. https://doi.org/10.1080/10618600.2017.1385471
Seiler, Christof; Holmes, Susan; . 2017. Multivariate heteroscedasticity models for functional brain connectivity. 11(DEC): 696. https://europepmc.org/articles/PMC5733000?pdf=render
Goltsman, Daniela S.Aliaga; Sun, Christine L.; Proctor, Diana M.; DiGiulio, Daniel B.; Robaczewska, Anna; Thomas, Brian C.; Shaw, Gary M.; Stevenson, David K.; Holmes, Susan P.; Banfield, Jillian F.; Relman, David A.; . 2018. Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome. 28(10): 1467-1480. http://biorxiv.org/content/early/2018/08/21/266700.abstract
Kronstad, Lisa M; Seiler, Christof; Vergara, Rosemary; Holmes, Susan P; Blish, Catherine A; . 2017. Strain-Specific Human Natural Killer Cell Recognition of Influenza A Virus. (9): 148528. http://biorxiv.org/content/early/2017/06/10/148528.abstract
Gars, M.L.; Seiler, C.; Kay, A.W.; Bayless, N.L.; Sola, E.; Starosvetsky, E.; Moore, L.; Shen-Orr, S.S.; Aziz, N.; Khatri, P.; Dekker, C.L.; Swan, G.E.; Davis, M.M.; Holmes, S.; Blish, C.A.; . 2018. CD38 contributes to human natural killer cell responses through a role in immune synapse formation. (9): 349084. http://biorxiv.org/content/early/2018/06/16/349084.abstract
Holmes, Susan; . 2018. Statistical proof? The problem of irreproducibility. 55(1): 31-55.
Donnat, Claire; Holmes, Susan; . 2018. Tracking network dynamics: A survey using graph distances. 12(2): 971-1012. https://projecteuclid.org:443/euclid.aoas/1532743483
Sankaran, Kris; Holmes, Susan; . 2018. Interactive Visualization of Hierarchically Structured Data. 27(3): 553-563. https://doi.org/10.1080/10618600.2017.1392866
Proctor, DIana M.; Fukuyama, Julia A.; Loomer, Peter M.; Armitage, Gary C.; Lee, Stacey A.; Davis, Nicole M.; Ryder, Mark I.; Holmes, Susan P.; Relman, David A.; . 2018. A spatial gradient of bacterial diversity in the human oral cavity shaped by salivary flow. 9(1): 681. https://doi.org/10.1038/s41467-018-02900-1
Jha, Aashish R.; Davenport, Emily R.; Gautam, Yoshina; Bhandari, Dinesh; Tandukar, Sarmila; Ng, Katharine M.; Fragiadakis, Gabriela K.; Holmes, Susan; Gautam, Guru Prasad; Leach, Jeff; Sherchand, Jeevan Bahadur; Bustamante, Carlos D.; Sonnenburg, Justin L.; . 2018. Gut microbiome transition across a lifestyle gradient in Himalaya. 16(11): e2005396-e2005396. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237292/
Davis, Nicole M.; Proctor, DIana M.; Holmes, Susan P.; Relman, David A.; Callahan, Benjamin J.; . 2018. Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data. 6(1): 226. https://doi.org/10.1186/s40168-018-0605-2